Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0965Conserved hypothetical protein; Identified by similarity to GB:AAO78428.1. (796 aa)    
Predicted Functional Partners:
PRU_2308
Putative glycosyl hydrolase.
  
     0.615
PRU_2169
Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1.
 
     0.559
PRU_0458
Conserved hypothetical protein; Identified by similarity to GB:AAO76548.1.
  
     0.558
PRU_0964
Hypothetical protein; Identified by glimmer; putative.
       0.519
PRU_0859
Peptidyl-prolyl cis-trans isomerase-like protein; Identified by similarity to GB:AAO79476.1.
 
 
 
 0.499
PRU_1115
Conserved domain protein; Identified by similarity to GB:AAO75603.1.
  
     0.496
PRU_0513
Putative thiol-disulfide oxidoreductase; Identified by similarity to GB:BAC81190.1; match to protein family HMM PF00578.
 
 
 0.494
PRU_0868
Conserved hypothetical protein; Identified by similarity to GB:AAO78760.1.
  
     0.487
PRU_1415
Putative thiol:disulfide interchange protein; Identified by match to protein family HMM PF02683.
  
 
 0.483
PRU_2691
Conserved hypothetical protein; Identified by similarity to GB:AAQ65281.1.
  
 
   0.479
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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