STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0972Peptidyl-prolyl cis-trans isomerase, FKBP family; Identified by match to protein family HMM PF00254. (132 aa)    
Predicted Functional Partners:
PRU_0971
Conserved hypothetical protein; Identified by similarity to GB:CAG73253.1; match to protein family HMM PF05728.
       0.737
PRU_0993
Putative lipoprotein.
    
   0.638
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
   
 
 0.584
fklB
Peptidyl-prolyl cis-trans isomerase, FKBP-type, 22 kDa subunit; Identified by similarity to SP:P39311; match to protein family HMM PF00254; match to protein family HMM PF01346.
 
    
0.577
PRU_0970
Hypothetical protein; Identified by glimmer; putative.
       0.554
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.517
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
   
 
 0.494
PRU_2040
Conserved hypothetical protein; Identified by similarity to GB:AAQ65968.1.
    
 
 0.473
PRU_2877
Putative FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase; Identified by similarity to SP:P51752; match to protein family HMM PF00254.
  
    0.456
htpG
Chaperone protein HtpG; Identified by similarity to GB:AAD51118.1; match to protein family HMM PF00183; match to protein family HMM PF02518.
   
 0.451
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.