Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_0974Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (300 aa)    
Predicted Functional Partners:
PRU_1503
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.740
PRU_1299
Conserved domain protein; Identified by similarity to SP:Q8R9T6.
  
 
 
 0.685
PRU_2360
Putative membrane protein.
  
     0.677
PRU_0975
Identified by match to protein family HMM PF02880.
       0.642
PRU_0817
STAS domain protein; Identified by match to protein family HMM PF01740.
  
     0.604
PRU_0913
Prophage PRU01, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
  
     0.546
PRU_0953
Putative Clp protease; Identified by match to protein family HMM PF00574.
  
   
 0.538
PRU_2275
Glycosyl hydrolase, family 32; Identified by match to protein family HMM PF00251.
  
  
 0.526
PRU_0954
Hypothetical protein; Identified by glimmer; putative.
  
     0.523
PRU_2589
Conserved hypothetical protein.
  
     0.512
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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