STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
PRU_0980Putative cytidine deaminase; Identified by similarity to SP:P19079; match to protein family HMM PF00383. (143 aa)    
Predicted Functional Partners:
PRU_0696
Identified by match to protein family HMM PF01048.
 
 
 0.971
PRU_2005
Identified by match to protein family HMM PF01048.
 
 
 0.964
PRU_2603
Identified by match to protein family HMM PF00485.
 
 
 0.940
tdk
Thymidine kinase; Identified by match to protein family HMM PF00265.
 
  
 0.929
PRU_2486
Identified by match to protein family HMM PF00485.
 
  
 0.925
PRU_1923
Identified by similarity to GB:AAM97494.1; match to protein family HMM PF00149.
 
  
 0.920
PRU_1666
Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.
 
  
 0.919
udk
Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.
    
 0.912
PRU_2844
Deoxyguanosine kinase/deoxyadenosine kinase subunit; Identified by similarity to SP:Q59483; similarity to SP:Q59484; match to protein family HMM PF01712.
    
 0.908
PRU_2845
Deoxyguanosine kinase/deoxyadenosine kinase subunit; Identified by similarity to SP:Q59483; similarity to SP:Q59484; match to protein family HMM PF01712.
    
 0.908
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.