STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0983Lipase/acylhydrolase; Identified by match to protein family HMM PF00657. (255 aa)    
Predicted Functional Partners:
PRU_0012
Putative pectinesterase; Identified by match to protein family HMM PF01095.
   
 0.960
PRU_1469
Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
 0.922
PRU_1461
Pectinase family protein/glycosyl hydrolase family 88; Identified by match to protein family HMM PF00295; match to protein family HMM PF07470; Belongs to the glycosyl hydrolase 28 family.
 
 0.906
PRU_1571
FG-GAP repeat domain protein; Identified by match to protein family HMM PF01839.
 
 0.885
PRU_2609
Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
 0.860
PRU_2307
Putative polygalacturonase/beta-xylosidase; Identified by similarity to GB:BAA78557.1; similarity to GB:BAC87941.1; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.811
PRU_1101
Putative pectinesterase; Identified by match to protein family HMM PF01095.
 
   
 0.785
PRU_2680
Putative xylan 1,4-beta-xylosidase; Identified by similarity to GB:BAC87941.1; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.782
PRU_2760
Putative endo-polygalacturonase; Identified by similarity to SP:P26509; match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
 0.777
pelA
Pectate lyase; Identified by similarity to GB:BAA81752.1; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
     0.775
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.