STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0992Glycogen synthase-like protein; Identified by similarity to SP:P39125; match to protein family HMM PF08323. (271 aa)    
Predicted Functional Partners:
PRU_1305
Putative 1,4-alpha-glucan branching enzyme; Identified by similarity to SP:Q04446; match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922.
 
 
 0.984
PRU_1371
Putative 4-alpha-glucanotransferase; Identified by similarity to GB:AAR99599.1; match to protein family HMM PF00686; match to protein family HMM PF02446.
  
 
 0.933
PRU_2751
Putative 4-alpha-glucanotransferase; Identified by similarity to GB:AAR99599.1; match to protein family HMM PF02446.
  
 
 0.933
PRU_1660
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
    
 0.901
malP
Maltodextrin phosphorylase; Identified by similarity to GB:AAD28735.1; match to protein family HMM PF00343; match to protein family HMM TIGR02094.
 
  
 0.841
pulA
Pullulanase, type I; Identified by similarity to GB:AAC44685.1; match to protein family HMM PF00128; match to protein family HMM TIGR02104; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.838
PRU_0993
Putative lipoprotein.
  
    0.767
PRU_0994
Hypothetical protein; Identified by glimmer; putative.
       0.753
PRU_0936
Conserved hypothetical protein; Identified by similarity to GB:AAO77865.1.
  
     0.509
PRU_2189
Conserved hypothetical protein; Identified by similarity to GB:AAM72893.1.
  
     0.503
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.