STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0993Putative lipoprotein. (486 aa)    
Predicted Functional Partners:
PRU_2877
Putative FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase; Identified by similarity to SP:P51752; match to protein family HMM PF00254.
  
 
   0.965
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
  
   0.955
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
    
   0.886
PRU_1026
Conserved hypothetical protein; Identified by similarity to GB:AAQ66654.1.
 
 
   0.834
PRU_0862
Conserved hypothetical protein; Identified by similarity to GB:AAQ65647.1.
 
 
   0.825
PRU_0994
Hypothetical protein; Identified by glimmer; putative.
       0.824
PRU_2169
Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1.
 
 
   0.806
PRU_0988
Conserved hypothetical protein.
 
     0.802
PRU_0303
Conserved hypothetical protein; Identified by similarity to GB:AAO79054.1.
    
   0.791
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
  
     0.774
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.