STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PRU_1024Putative indolepyruvate oxidoreductase, beta subunit; Identified by similarity to SP:O07836; match to protein family HMM PF01558. (190 aa)    
Predicted Functional Partners:
PRU_1025
Putative indolepyruvate oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
 0.988
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by similarity to GB:CAA70873.1; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176.
  
 
 0.983
PRU_1023
Aminotransferase domain protein; Identified by similarity to GB:AAN30193.1; match to protein family HMM PF00155.
 
  
 0.781
PRU_2268
Putative keto/oxoacid ferredoxin oxidoreductase, beta subunit; Identified by similarity to GB:BAB21495.1; match to protein family HMM PF02775.
  
 
 0.642
PRU_1149
Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:AAC38211.1; match to protein family HMM PF01855; match to protein family HMM PF02780.
 
 
 0.607
PRU_0058
ACT domain protein; Identified by match to protein family HMM PF01842.
 
    0.560
PRU_2267
Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:BAB21494.1; match to protein family HMM PF01855; match to protein family HMM TIGR03710.
  
 
 0.468
PRU_1150
Putative ferridoxin oxidoreductase, 4Fe-4S binding subunit; Identified by similarity to GB:AAC38210.1; match to protein family HMM PF00037.
 
 
 0.437
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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