STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1111Conserved hypothetical protein; Identified by similarity to GB:AAO78246.1. (113 aa)    
Predicted Functional Partners:
PRU_1110
DNA binding protein, excisionase family.
 
     0.941
PRU_0835
Conserved hypothetical protein; Identified by similarity to GB:AAO76466.1.
  
    0.660
PRU_1115
Conserved domain protein; Identified by similarity to GB:AAO75603.1.
  
     0.620
PRU_1114
Mobilization protein; Identified by similarity to GB:AAA98401.1; match to protein family HMM PF03432.
 
  
 0.602
PRU_1344
Conserved hypothetical protein; Identified by similarity to GB:AAK02835.1.
  
     0.589
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
  
     0.512
PRU_1587
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
 
   
 0.505
PRU_1106
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
 
   
 0.504
PRU_2508
Conserved hypothetical protein.
  
     0.501
thiS
Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.
  
     0.474
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.