STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1122Putative membrane protein; Identified by match to protein family HMM PF07884. (456 aa)    
Predicted Functional Partners:
PRU_1121
Peptide ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
 
     0.946
PRU_1120
Putative toxin secretion protein; Identified by similarity to SP:P16534.
 
     0.941
PRU_0714
Peptide ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
 
     0.773
PRU_0715
Putative toxin secretion protein; Identified by similarity to SP:P16534.
 
     0.760
PRU_1415
Putative thiol:disulfide interchange protein; Identified by match to protein family HMM PF02683.
  
 
 0.599
PRU_1161
Putative lipoprotein.
  
  
 0.531
PRU_0273
Putative lipoprotein; Identified by match to protein family HMM PF07980.
  
     0.458
PRU_1160
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.404
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.402
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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