Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1127Putative permease; Identified by match to protein family HMM PF00403; match to protein family HMM PF03773. (409 aa)    
Predicted Functional Partners:
cadA
Cadmium-exporting ATPase; Identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
  
 
 0.911
PRU_1128
Cation transporter, cation diffusion facilitator (CDF) family; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
  
 0.766
PRU_1129
Putative O-acetyltransferase; Identified by match to protein family HMM PF00132.
  
    0.716
PRU_2476
Peptidase, S41A family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.
  
  
 0.596
PRU_1126
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.587
PRU_0010
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
  
  
 0.578
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
  
  
 0.561
PRU_1125
Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.
 
     0.554
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
  
  
 0.529
PRU_2129
Putative transcriptional regulator; Identified by similarity to SP:P06555; match to protein family HMM PF03965.
  
  
 0.504
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.