STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1140Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family. (339 aa)    
Predicted Functional Partners:
PRU_2437
Glycosyl hydrolase, family 43.
 
     0.810
PRU_0277
Hypothetical protein; Identified by glimmer; putative.
  
     0.643
PRU_0275
Conserved domain protein; Identified by similarity to GB:AAM43445.1.
  
     0.641
PRU_0868
Conserved hypothetical protein; Identified by similarity to GB:AAO78760.1.
  
     0.628
PRU_2314
Alpha-glucosidase family protein; Identified by similarity to GB:AAC44671.1.
 
     0.591
PRU_2440
Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470.
 
     0.590
PRU_0117
Alpha-glucosidase family protein; Identified by similarity to GB:AAC44671.1.
 
     0.587
PRU_1267
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.528
PRU_2443
Conserved hypothetical protein; Identified by similarity to PIR:H72299.
 
     0.488
PRU_1590
Putative lipoprotein; Identified by match to protein family HMM PF07980.
  
     0.468
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.