Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRU_1200Conserved hypothetical protein; Identified by similarity to GB:AAK92870.1. (346 aa)    
Predicted Functional Partners:
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
 
   
 0.654
PRU_0088
Octopine/opine/tauropine dehydrogenase-like protein; Identified by similarity to SP:Q44297; match to protein family HMM PF01210; match to protein family HMM PF02317.
 
     0.632
PRU_0446
Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.541
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
     
 0.541
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
  
    0.522
PRU_0814
Conserved domain protein; Identified by similarity to GB:AAQ66446.1; match to protein family HMM PF07719.
 
    0.490
PRU_1203
Sensor histidine kinase; Identified by match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
   0.484
PRU_1198
ATP synthase F1, epsilon subunit; Identified by similarity to SP:P35111; match to protein family HMM PF02823.
  
  
 0.481
PRU_2632
Putative lipoprotein; Identified by similarity to GB:AAQ66246.1; match to protein family HMM PF00578; match to protein family HMM PF08534.
 
 
   0.476
PRU_1202
Sodium transporter, NhaD sodium:hydrogen antiporter (NhaD) family; Identified by similarity to GB:BAA25994.1; match to protein family HMM PF03600.
       0.468
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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