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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1237Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
gltA_2
Glutamate synthase (NADPH), large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
  
 0.710
PRU_1239
Putative membrane protein; Identified by similarity to GB:AAT82423.1; match to protein family HMM PF06738.
     
 0.508
PRU_1238
Hypothetical protein; Identified by glimmer; putative.
       0.442
PRU_1636
Amino acid ABC transporter, ATP-binding protein/permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   
  
 0.438
PRU_1349
Sensor histindine kinase/DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.417
PRU_0472
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
  
 0.401
PRU_2204
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
  
 0.401
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.