Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_1256Putative membrane protein; Identified by similarity to GB:CAG22388.1; match to protein family HMM PF01061; overlaps another CDS with the same product name. (384 aa)    
Predicted Functional Partners:
PRU_1257
Conserved hypothetical protein; Identified by match to protein family HMM PF00529.
 
  
 0.944
PRU_1255
Putative membrane protein; Identified by similarity to GB:AAO79007.1; match to protein family HMM PF01061; overlaps another CDS with the same product name.
    
0.929
PRU_1258
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   
 0.893
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.779
PRU_1254
Hypothetical protein; Identified by glimmer; putative.
       0.773
PRU_1252
Putative membrane protein; Identified by similarity to GB:AAO79343.1; match to protein family HMM PF00892.
 
     0.685
PRU_1259
Conserved hypothetical protein; Identified by similarity to GB:AAQ66448.1.
       0.663
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02322.
 
    0.594
PRU_1260
Conserved hypothetical protein; Identified by similarity to GB:AAQ66043.1.
       0.543
PRU_1261
Putative cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.
       0.535
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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