STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1257Conserved hypothetical protein; Identified by match to protein family HMM PF00529. (330 aa)    
Predicted Functional Partners:
PRU_1258
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.958
PRU_1255
Putative membrane protein; Identified by similarity to GB:AAO79007.1; match to protein family HMM PF01061; overlaps another CDS with the same product name.
 
  
 0.952
PRU_1256
Putative membrane protein; Identified by similarity to GB:CAG22388.1; match to protein family HMM PF01061; overlaps another CDS with the same product name.
 
  
 0.952
PRU_1259
Conserved hypothetical protein; Identified by similarity to GB:AAQ66448.1.
       0.774
PRU_0318
Multidrug resistance protein, AcrB/AcrD family; Identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM PF02321; match to protein family HMM TIGR01845; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.717
PRU_1260
Conserved hypothetical protein; Identified by similarity to GB:AAQ66043.1.
       0.685
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.661
PRU_1254
Hypothetical protein; Identified by glimmer; putative.
       0.661
PRU_2056
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.654
PRU_1261
Putative cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.
  
    0.635
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.