Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_1302AMP-binding enzyme; Identified by match to protein family HMM PF00501. (552 aa)    
Predicted Functional Partners:
PRU_1303
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
  
 
0.981
PRU_2490
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  
 
0.927
PRU_1301
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
       0.663
PRU_2034
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
 0.661
PRU_1300
Putative aspartate aminotransferase; Identified by similarity to PDB:1O4S_A; match to protein family HMM PF00155.
  
    0.637
PRU_1298
Conserved hypothetical protein; Identified by similarity to GB:AAO76438.1.
       0.432
PRU_1297
Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
     
 0.425
PRU_1299
Conserved domain protein; Identified by similarity to SP:Q8R9T6.
       0.402
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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