STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1330Polysaccharide export protein, outer membrane auxiliary (OMA) family; Identified by match to protein family HMM PF02563. (260 aa)    
Predicted Functional Partners:
PRU_1331
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
 
 
 0.970
PRU_1781
Chain length determinant family protein; Identified by match to protein family HMM PF02706; match to protein family HMM TIGR01007.
 
 
 0.967
PRU_1779
Lipoprotein, polysaccharide biosynthesis/export family; Identified by match to protein family HMM PF02563.
  
  
 
0.915
PRU_1335
Glycosyl transferase family 11 protein; Identified by match to protein family HMM PF01531.
 
     0.793
PRU_1334
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
  
 0.788
PRU_1332
Polysaccharide transporter, polysaccharide transporter (PST) family; Identified by match to protein family HMM PF01943.
  
  
 0.780
PRU_1336
Glycosyltransferase, group 2 family; Identified by similarity to SP:Q46635; match to protein family HMM PF00535.
     
 0.776
PRU_1337
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.773
PRU_1333
Hypothetical protein; Identified by glimmer; putative.
       0.758
PRU_0084
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
  
  
 0.636
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.