STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1393Identified by match to protein family HMM PF01757. (332 aa)    
Predicted Functional Partners:
PRU_1394
Conserved hypothetical protein; Identified by similarity to GB:CAG37938.1.
       0.743
PRU_1395
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
    0.731
PRU_0604
Conserved domain protein; Identified by similarity to SP:Q9GKS9.
  
     0.582
PRU_1384
Putative membrane protein; Identified by similarity to GB:AAO76272.1.
 
    0.571
PRU_2360
Putative membrane protein.
  
     0.554
PRU_1396
Putative pectin acetylesterase; Identified by similarity to GB:CAD45188.1.
       0.531
PRU_2800
Putative lipoprotein; Identified by similarity to SP:P12608; match to protein family HMM PF09375.
  
     0.491
PRU_2589
Conserved hypothetical protein.
  
     0.478
PRU_1383
Conserved hypothetical protein; Identified by similarity to GB:AAO76271.1.
 
  
 0.477
PRU_1642
Conserved hypothetical protein; Identified by similarity to GB:AAQ66639.1.
  
     0.467
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.