STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1473Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248. (323 aa)    
Predicted Functional Partners:
PRU_1471
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.701
PRU_1472
Lipase/acylhydrolase; Identified by match to protein family HMM PF00657.
       0.694
PRU_1470
Putative glycosyl hydrolase; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
    0.670
PRU_1474
Conserved hypothetical protein; Identified by similarity to GB:AAO75753.1.
       0.452
aqpZ
Aquaporin Z; Identified by similarity to GB:AAC43518.1; match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.452
rhaA
L-rhamnose isomerase; Identified by similarity to SP:P32170; Belongs to the rhamnose isomerase family.
  
    0.445
rhaB
Rhamnulokinase; Identified by similarity to SP:P32171; similarity to GB:AAF01486.1; match to protein family HMM PF00370; match to protein family HMM PF02782.
  
  
 0.443
PRU_1673
Lipase domain protein; Identified by similarity to GB:AAF87662.1.
  
  
 0.433
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
  
 0.410
PRU_1466
Sugar transporter, sugar porter (SP) family; Identified by similarity to SP:P42417; match to protein family HMM PF00083; match to protein family HMM PF07690.
     
 0.401
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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