STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1497Lipase/acylhydrolase; Identified by match to protein family HMM PF00657. (383 aa)    
Predicted Functional Partners:
PRU_1498
Identified by match to protein family HMM PF03061.
       0.714
PRU_1673
Lipase domain protein; Identified by similarity to GB:AAF87662.1.
 
  
 0.594
PRU_1496
Conserved hypothetical protein; Identified by similarity to GB:AAM54968.1.
  
    0.573
PRU_0345
Conserved hypothetical protein; Identified by similarity to PIR:B83074; match to protein family HMM PF08719; match to protein family HMM TIGR02464.
  
     0.572
PRU_1495
HipA domain protein; Identified by similarity to GB:CAG73047.1; match to protein family HMM PF07804; match to protein family HMM PF07805.
       0.565
PRU_0496
Putative pectate lyase; Identified by similarity to GB:CAC33162.1; match to protein family HMM PF00544.
 
  
 0.535
PRU_0283
Identified by match to protein family HMM PF00753.
 
     0.521
PRU_1242
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
 
   
 0.516
PRU_1499
Conserved hypothetical protein; Identified by similarity to GB:AAN81742.1.
       0.508
PRU_2744
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
     0.489
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.