STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1597Putative lipoprotein; Identified by match to protein family HMM PF07980. (603 aa)    
Predicted Functional Partners:
PRU_1596
Putative outer membrane protein SusC; Identified by similarity to GB:AAA95938.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.964
PRU_1598
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
 
  
 0.940
PRU_0983
Lipase/acylhydrolase; Identified by match to protein family HMM PF00657.
  
   0.701
PRU_0012
Putative pectinesterase; Identified by match to protein family HMM PF01095.
  
   
 0.700
PRU_2611
Putative lipoprotein; Identified by match to protein family HMM PF07980.
  
     0.698
PRU_1595
Sugar binding domain protein; Identified by match to protein family HMM PF02837.
 
 
 0.677
PRU_2680
Putative xylan 1,4-beta-xylosidase; Identified by similarity to GB:BAC87941.1; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.676
PRU_2445
Putative receptor antigen RagA; Identified by similarity to GB:CAA10226.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.664
PRU_1591
Putative receptor antigen RagA; Identified by similarity to GB:CAA10226.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 
 0.652
PRU_1469
Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
   0.631
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.