STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1642Conserved hypothetical protein; Identified by similarity to GB:AAQ66639.1. (341 aa)    
Predicted Functional Partners:
PRU_1643
Putative biotin carboxyl carrier protein; Identified by match to protein family HMM PF00364.
       0.787
PRU_1648
Conserved hypothetical protein; Identified by similarity to GB:AAO79446.1.
 
     0.756
PRU_0803
Positive regulator of sigma(E), RseC/MucC family; Identified by match to protein family HMM PF04246.
  
     0.741
PRU_1641
Transporter, aspartate:alanine exchanger (AAE) family; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625.
 
     0.712
PRU_2557
Conserved hypothetical protein; Identified by similarity to GB:AAO79826.1.
  
     0.707
PRU_1774
Conserved domain protein; Identified by similarity to GB:AAO79651.1.
  
     0.698
PRU_0604
Conserved domain protein; Identified by similarity to SP:Q9GKS9.
  
     0.693
PRU_2800
Putative lipoprotein; Identified by similarity to SP:P12608; match to protein family HMM PF09375.
  
     0.686
PRU_1775
Conserved domain protein; Identified by similarity to GB:BAD51011.1.
  
     0.676
PRU_2360
Putative membrane protein.
  
     0.664
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.