STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1702Conserved hypothetical protein; Identified by similarity to GB:AAO78924.1; match to protein family HMM PF04468. (383 aa)    
Predicted Functional Partners:
PRU_1701
Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540.
 
   0.819
PRU_1703
Conserved hypothetical protein; Identified by similarity to GB:AAO78923.1.
       0.773
metF
Methylenetetrahydrofolate reductase (NAD(P)H); Identified by similarity to GB:AAF64321.1; match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.
       0.763
rny
KH/HDIG domain protein; Endoribonuclease that initiates mRNA decay.
 
  
 0.736
pyrK
Dihydroorotate oxidase, electron transfer subunit; Identified by similarity to SP:P25983; match to protein family HMM PF00175.
 
  
 0.516
PRU_1699
Putative membrane protein; Identified by similarity to GB:AAO77247.1.
       0.500
PRU_1297
Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
     0.419
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.