STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1703Conserved hypothetical protein; Identified by similarity to GB:AAO78923.1. (143 aa)    
Predicted Functional Partners:
PRU_1702
Conserved hypothetical protein; Identified by similarity to GB:AAO78924.1; match to protein family HMM PF04468.
       0.804
metF
Methylenetetrahydrofolate reductase (NAD(P)H); Identified by similarity to GB:AAF64321.1; match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.
       0.755
PRU_1701
Putative DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540.
       0.755
PRU_1992
Conserved hypothetical protein; Identified by similarity to GB:AAO79085.1.
  
     0.724
PRU_1900
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.624
PRU_2174
Conserved domain protein; Identified by similarity to GB:AAH55225.1; match to protein family HMM TIGR03513.
  
   
 0.620
PRU_0245
Conserved hypothetical protein; Identified by similarity to GB:AAO79698.1.
  
     0.616
PRU_0632
Putative lipoprotein; Identified by similarity to GB:AAO79294.1.
  
   
 0.597
PRU_1557
Conserved hypothetical protein; Identified by similarity to GB:AAQ65387.1.
  
     0.588
PRU_1699
Putative membrane protein; Identified by similarity to GB:AAO77247.1.
 
     0.573
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.