STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1762Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (397 aa)    
Predicted Functional Partners:
PRU_1763
Acyltransferase family protein.
       0.773
PRU_1764
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
       0.773
PRU_1525
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
     0.735
PRU_1530
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
     0.636
PRU_1759
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535; overlaps another CDS with the same product name.
 
  
 0.588
PRU_1757
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
 
     0.577
PRU_1765
Putative membrane protein; Identified by similarity to GB:AAO75147.1; match to protein family HMM PF01943.
  
  
 0.546
PRU_1761
Hypothetical protein; Identified by glimmer; putative.
     
 0.539
PRU_0102
Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF07993.
 
  
 0.520
PRU_1767
Glycerophosphoryl diester phosphodiesterase/cytidylyltransferase family protein; Identified by match to protein family HMM PF01467; match to protein family HMM PF03009; match to protein family HMM TIGR00125.
  
  
 0.515
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.