STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1826TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (200 aa)    
Predicted Functional Partners:
idsA
Short chain isoprenyl diphosphate synthase; Identified by similarity to SP:Q53479; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
    0.874
PRU_1824
Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.
     
 0.852
PRU_1820
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.817
PRU_1819
Conserved hypothetical protein; Identified by similarity to GB:AAQ65940.1.
 
 
 0.814
PRU_1822
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
  
 
 0.810
PRU_2459
Conserved hypothetical protein; Identified by similarity to GB:AAO76567.1.
 
 
 0.749
PRU_1591
Putative receptor antigen RagA; Identified by similarity to GB:CAA10226.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.737
PRU_1827
Conserved hypothetical protein; Identified by similarity to GB:AAQ65786.1.
  
    0.708
PRU_1874
Putative receptor antigen RagA; Identified by similarity to GB:CAA10226.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 0.697
PRU_2161
Conserved hypothetical protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.692
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.