STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1851Putative membrane protein; Identified by similarity to GB:AAO78724.1. (357 aa)    
Predicted Functional Partners:
PRU_1852
Putative alpha-N-acetylglucosaminidase; Identified by match to protein family HMM PF05089.
 
  
  0.861
PRU_1850
Hypothetical protein; Identified by glimmer; putative.
       0.773
PRU_1853
Identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.773
PRU_1854
Conserved domain protein; Identified by similarity to PRF:1101273H.
       0.588
acrA
Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.468
PRU_1624
Conserved hypothetical protein; Identified by similarity to GB:AAQ66211.1.
  
    0.454
PRU_1155
Dehydrogenase domain protein; Identified by similarity to SP:P31958; match to protein family HMM PF02585.
 
     0.439
PRU_1855
Transporter, alanine or glycine:cation symporter (AGCS) family; Identified by similarity to GB:BAA74514.1; match to protein family HMM PF01235; match to protein family HMM TIGR00835.
       0.428
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.