STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1900Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (939 aa)    
Predicted Functional Partners:
PRU_1899
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF08665.
 
     0.885
PRU_2176
Conserved hypothetical protein; Identified by similarity to GB:AAQ65506.1; match to protein family HMM TIGR03519.
  
     0.774
PRU_0475
Conserved hypothetical protein; Identified by similarity to GB:AAQ67052.1.
  
     0.773
PRU_0837
Conserved hypothetical protein; Identified by similarity to GB:AAQ66839.1.
  
     0.773
PRU_1922
porT protein; Identified by similarity to GB:BAA36600.1.
  
     0.772
PRU_2040
Conserved hypothetical protein; Identified by similarity to GB:AAQ65968.1.
  
     0.772
PRU_1273
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
 
    0.771
PRU_2172
Conserved hypothetical protein; Identified by similarity to GB:AAQ65510.1; match to protein family HMM TIGR03523.
  
     0.771
PRU_2174
Conserved domain protein; Identified by similarity to GB:AAH55225.1; match to protein family HMM TIGR03513.
  
     0.770
PRU_2690
Conserved hypothetical protein; Identified by similarity to GB:AAQ65282.1.
 
     0.770
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.