STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1909Putative glycosyl hydrolase; Identified by match to protein family HMM PF02837. (513 aa)    
Predicted Functional Partners:
PRU_1908
Conserved hypothetical protein; Identified by similarity to GB:AAQ65540.1.
     
 0.742
PRU_1522
Beta-galactosidase; Identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
  
  0.718
lacZ
Beta-galactosidase; Identified by similarity to SP:P00722; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
  
  0.695
PRU_1568
Glycosyl hydrolase, family 35; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family.
 
 
 0.674
PRU_2780
Glycosyl hydrolase, family 29; Identified by match to protein family HMM PF01120.
 
   
 0.661
PRU_1470
Putative glycosyl hydrolase; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.657
PRU_1907
Putative lipoprotein.
       0.611
PRU_0082
Putative beta-galactosidase; Identified by similarity to SP:P48982; match to protein family HMM PF01301; match to protein family HMM PF02449.
 
 
 0.584
PRU_1079
Glycosyl hydrolase, family 2; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
     0.538
PRU_1464
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.535
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.