STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1911Conserved hypothetical protein; Identified by similarity to GB:BAD47341.1. (134 aa)    
Predicted Functional Partners:
PRU_1834
Conserved hypothetical protein; Identified by similarity to GB:AAO78317.1.
  
     0.720
PRU_1912
Putative membrane protein; Identified by similarity to GB:AAO77524.1; match to protein family HMM PF03739.
       0.704
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
       0.646
PRU_2928
Conserved hypothetical protein; Identified by similarity to GB:AAO77113.1.
  
     0.604
PRU_1858
Conserved hypothetical protein; Identified by similarity to GB:AAO79032.1; match to protein family HMM PF07659.
  
     0.534
PRU_0679
Identified by match to protein family HMM PF03372.
  
     0.525
PRU_2180
PspC domain protein; Identified by match to protein family HMM PF04024.
  
     0.499
PRU_2563
Conserved hypothetical protein; Identified by similarity to GB:CAD76499.1.
  
     0.496
PRU_2884
Conserved hypothetical protein; Identified by similarity to GB:AAO78272.1.
 
     0.490
PRU_1300
Putative aspartate aminotransferase; Identified by similarity to PDB:1O4S_A; match to protein family HMM PF00155.
 
    0.478
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.