STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1920Putative tetratricopeptide repeat family protein. (474 aa)    
Predicted Functional Partners:
PRU_1919
ABC transporter, periplasmic substrate-binding protein.
 
  
 0.916
PRU_1917
Conserved hypothetical protein; Identified by similarity to GB:AAO77773.1.
 
  
 0.907
PRU_1916
Conserved hypothetical protein; Identified by similarity to GB:AAO77774.1.
 
  
 0.894
PRU_1918
Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
    0.874
PRU_1915
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
  
 0.823
PRU_2518
Putative lipoprotein.
 
   
 0.691
PRU_2509
Putative lipoprotein.
 
 
   0.575
PRU_0954
Hypothetical protein; Identified by glimmer; putative.
  
     0.557
PRU_0679
Identified by match to protein family HMM PF03372.
 
     0.555
PRU_1631
Conserved hypothetical protein; Identified by similarity to GB:AAO76782.1.
 
   
 0.553
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.