STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1977Conserved hypothetical protein; Identified by similarity to GB:AAO75653.1. (245 aa)    
Predicted Functional Partners:
PRU_0803
Positive regulator of sigma(E), RseC/MucC family; Identified by match to protein family HMM PF04246.
  
     0.739
PRU_1648
Conserved hypothetical protein; Identified by similarity to GB:AAO79446.1.
  
     0.688
PRU_2841
Identified by match to protein family HMM PF04909.
  
     0.674
PRU_2557
Conserved hypothetical protein; Identified by similarity to GB:AAO79826.1.
  
     0.616
PRU_1431
Conserved hypothetical protein; Identified by similarity to GB:AAO76285.1.
  
     0.598
amt
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
       0.597
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by similarity to SP:P22106; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
       0.594
PRU_2128
Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
  
     0.586
PRU_1642
Conserved hypothetical protein; Identified by similarity to GB:AAQ66639.1.
  
     0.585
PRU_1870
Putative lipoprotein; Identified by similarity to GB:AAO77379.1.
  
     0.548
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.