STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1979ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (224 aa)    
Predicted Functional Partners:
PRU_1985
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.980
PRU_2059
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 0.980
PRU_1980
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.916
PRU_1932
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 0.908
PRU_1981
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.900
PRU_1983
ABC transporter, permease protein; Identified by similarity to GB:BAD49120.1; match to protein family HMM PF02687.
 
 
 0.854
PRU_1933
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 0.830
PRU_1986
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.783
PRU_1121
Peptide ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
 
   
0.701
PRU_1509
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.676
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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