STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1981ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (783 aa)    
Predicted Functional Partners:
PRU_1979
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.900
PRU_1986
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.839
PRU_1988
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02954.
 
     0.746
PRU_1982
Conserved domain protein; Identified by similarity to GB:AAO77607.1.
       0.727
PRU_1980
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
    
0.704
PRU_1989
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
 
   
 0.671
PRU_2360
Putative membrane protein.
  
     0.534
PRU_2058
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.509
PRU_1803
Putative lipoprotein; Identified by similarity to GB:AAQ65620.1.
 
    0.504
PRU_1934
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.478
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.