Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1989Sensor histidine kinase; Identified by match to protein family HMM PF02518. (273 aa)    
Predicted Functional Partners:
PRU_1988
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02954.
 
 
 0.895
PRU_1985
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 
 0.807
PRU_1986
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.778
PRU_1981
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
   
 0.671
PRU_1983
ABC transporter, permease protein; Identified by similarity to GB:BAD49120.1; match to protein family HMM PF02687.
 
   
 0.645
PRU_1559
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728.
 
 
 0.539
PRU_1980
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
   
 0.517
PRU_1619
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 
 0.461
PRU_0070
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 
 0.457
PRU_0888
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.455
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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