STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1990Putative helicase; Identified by similarity to GB:AAQ66376.1. (461 aa)    
Predicted Functional Partners:
PRU_1992
Conserved hypothetical protein; Identified by similarity to GB:AAO79085.1.
       0.663
PRU_1993
Putative methyltransferase; Identified by similarity to GB:AAO82170.1; match to protein family HMM PF03602.
       0.663
PRU_1649
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
 
 
 0.627
speG
Spermidine N(1)-acetyltransferase; Identified by similarity to SP:P37354; match to protein family HMM PF00583.
 
    0.611
PRU_1991
Hypothetical protein; Identified by glimmer; putative.
       0.543
PRU_1211
Conserved hypothetical protein; Identified by similarity to GB:AAQ66299.1.
  
     0.537
PRU_1553
Conserved hypothetical protein; Identified by similarity to GB:AAQ66285.1.
  
     0.531
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
    0.531
PRU_2316
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.488
PRU_1650
Conserved hypothetical protein; Identified by similarity to GB:AAO76164.1.
 
     0.454
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.