STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1993Putative methyltransferase; Identified by similarity to GB:AAO82170.1; match to protein family HMM PF03602. (183 aa)    
Predicted Functional Partners:
PRU_1992
Conserved hypothetical protein; Identified by similarity to GB:AAO79085.1.
  
    0.865
PRU_1991
Hypothetical protein; Identified by glimmer; putative.
       0.773
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
  
 0.721
PRU_2884
Conserved hypothetical protein; Identified by similarity to GB:AAO78272.1.
  
     0.709
PRU_1990
Putative helicase; Identified by similarity to GB:AAQ66376.1.
       0.705
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
   
 0.596
PRU_1834
Conserved hypothetical protein; Identified by similarity to GB:AAO78317.1.
  
    0.587
PRU_0758
Conserved hypothetical protein; Identified by similarity to GB:AAO76015.1.
 
    0.508
PRU_1300
Putative aspartate aminotransferase; Identified by similarity to PDB:1O4S_A; match to protein family HMM PF00155.
 
     0.481
engA
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
    0.472
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.