Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
PRU_2005Identified by match to protein family HMM PF01048. (279 aa)    
Predicted Functional Partners:
PRU_0980
Putative cytidine deaminase; Identified by similarity to SP:P19079; match to protein family HMM PF00383.
 
 
 0.964
PRU_2270
Putative uracil phosphoribosyltransferase; Identified by similarity to SP:P25532; match to protein family HMM PF00156.
  
  
 0.918
PRU_2603
Identified by match to protein family HMM PF00485.
   
 0.910
udk
Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.
    
 0.909
PRU_1814
Dihydroorotate oxidase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
    
 0.909
PRU_2486
Identified by match to protein family HMM PF00485.
    
 0.909
tdk
Thymidine kinase; Identified by match to protein family HMM PF00265.
     
 0.908
surE
Acid phosphatase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.905
PRU_0696
Identified by match to protein family HMM PF01048.
  
  
 
0.902
PRU_1310
Putative 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Identified by similarity to SP:P08331; match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.
    
  0.902
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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