STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2129Putative transcriptional regulator; Identified by similarity to SP:P06555; match to protein family HMM PF03965. (119 aa)    
Predicted Functional Partners:
PRU_2128
Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
 
 
 0.991
PRU_2456
Conserved domain protein; Identified by similarity to GB:AAO75743.1; match to protein family HMM PF05569.
 
  
 0.849
PRU_2724
Conserved domain protein; Identified by similarity to GB:AAO79304.1; match to protein family HMM PF05569.
 
  
 0.848
PRU_2127
Conserved domain protein; Identified by similarity to GB:AAO76797.1.
  
    0.586
PRU_1127
Putative permease; Identified by match to protein family HMM PF00403; match to protein family HMM PF03773.
  
  
 0.504
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
       0.435
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.