STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2161Conserved hypothetical protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF00593; match to protein family HMM PF07715. (838 aa)    
Predicted Functional Partners:
PRU_2162
Conserved hypothetical protein; Identified by similarity to GB:AAO77280.1.
       0.710
PRU_2163
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.688
PRU_1826
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.626
PRU_2899
Conserved hypothetical protein; Identified by similarity to GB:AAQ66950.1.
  
     0.597
PRU_2226
Conserved hypothetical protein; Identified by similarity to GB:AAO78000.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.584
PRU_2164
Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132.
  
    0.570
PRU_2159
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02985; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.561
PRU_1886
Conserved hypothetical protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.546
PRU_2160
Hypothetical protein; Identified by glimmer; putative.
       0.528
PRU_0697
Conserved hypothetical protein; Identified by similarity to GB:BAD47928.1; match to protein family HMM PF07676.
  
     0.525
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.