STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2169Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1. (536 aa)    
Predicted Functional Partners:
PRU_0993
Putative lipoprotein.
 
 
   0.806
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
  
 
   0.779
PRU_0859
Peptidyl-prolyl cis-trans isomerase-like protein; Identified by similarity to GB:AAO79476.1.
 
   
 0.753
PRU_2778
Putative DNA-binding protein.
  
     0.748
PRU_1615
Putative lipoprotein; Identified by similarity to GB:AAO75346.1.
 
    0.744
PRU_2326
Conserved hypothetical protein; Identified by similarity to GB:AAO78560.1.
  
     0.742
PRU_0458
Conserved hypothetical protein; Identified by similarity to GB:AAO76548.1.
 
     0.739
PRU_2308
Putative glycosyl hydrolase.
  
     0.721
PRU_2755
Conserved hypothetical protein; Identified by match to protein family HMM PF01569.
  
     0.720
PRU_0195
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
  
   
 0.713
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.