STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2178Identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180. (762 aa)    
Predicted Functional Partners:
PRU_2177
Putative glutaminase; Identified by similarity to GB:BAA86934.1; match to protein family HMM PF08760.
 
     0.834
PRU_2179
Transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
       0.533
PRU_2176
Conserved hypothetical protein; Identified by similarity to GB:AAQ65506.1; match to protein family HMM TIGR03519.
       0.511
PRU_2175
Putative lipoprotein; Identified by similarity to GB:AAQ65507.1; match to protein family HMM PF03781.
       0.495
PRU_2180
PspC domain protein; Identified by match to protein family HMM PF04024.
       0.494
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.