STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2180PspC domain protein; Identified by match to protein family HMM PF04024. (525 aa)    
Predicted Functional Partners:
PRU_2179
Transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
 
     0.859
PRU_2360
Putative membrane protein.
  
     0.648
PRU_0604
Conserved domain protein; Identified by similarity to SP:Q9GKS9.
 
  
 0.576
PRU_0913
Prophage PRU01, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
  
     0.575
PRU_1275
PspC domain protein; Identified by match to protein family HMM PF04024.
 
     0.562
PRU_0193
Conserved hypothetical protein; Identified by similarity to GB:AAO79667.1.
  
     0.534
PRU_0070
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.526
PRU_1299
Conserved domain protein; Identified by similarity to SP:Q8R9T6.
  
     0.525
PRU_1680
Conserved hypothetical protein; Identified by similarity to GB:BAD47496.1.
  
     0.524
PRU_2518
Putative lipoprotein.
  
     0.518
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.