STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2185Conserved hypothetical protein; Identified by similarity to GB:AAO79174.1. (533 aa)    
Predicted Functional Partners:
susB
Alpha-glucosidase; Identified by similarity to GB:AAC44671.1.
 
     0.635
PRU_2684
Conserved hypothetical protein; Identified by similarity to GB:AAB42173.1.
 
   
 0.596
PRU_2683
Putative lipoprotein.
 
   
 0.589
PRU_1889
Conserved domain protein.
  
     0.555
PRU_1888
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.529
PRU_0155
Putative lipoprotein.
  
     0.513
PRU_1875
Putative lipoprotein.
  
     0.511
PRU_0154
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.495
PRU_2682
Outer membrane protein, SusD; Identified by similarity to GB:AAB42172.1; match to protein family HMM PF07980.
 
     0.484
PRU_2186
Putative lipoprotein; Identified by similarity to GB:AAO78194.1.
     
 0.482
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.