STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2189Conserved hypothetical protein; Identified by similarity to GB:AAM72893.1. (73 aa)    
Predicted Functional Partners:
PRU_2353
Conserved hypothetical protein; Identified by similarity to GB:AAQ65828.1.
  
     0.770
PRU_0202
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.755
PRU_1068
Conserved hypothetical protein; Identified by similarity to PIR:A81676.
  
     0.720
PRU_2283
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
     0.666
PRU_1810
Putative membrane protein; Identified by similarity to GB:AAQ67097.1.
  
     0.641
PRU_2190
ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.618
PRU_0538
Conserved hypothetical protein; Identified by similarity to GB:AAM72604.1; match to protein family HMM PF02591.
  
     0.585
PRU_1853
Identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.581
PRU_1354
Conserved hypothetical protein; Identified by similarity to GB:AAQ66307.1.
  
     0.566
lepB
Signal peptidase I; Identified by similarity to SP:P00803; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
 
     0.565
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.