STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2209SpoIIE domain protein; Identified by match to protein family HMM PF07228. (648 aa)    
Predicted Functional Partners:
PRU_2624
Serine-protein kinase; Identified by similarity to OMNI:NTL01SS01077.
 
 0.863
PRU_0024
Serine-protein kinase; Identified by similarity to OMNI:NTL01SS01077.
 
 
 0.861
PRU_2623
Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.860
PRU_0597
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.855
PRU_0023
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.829
PRU_2210
Transcarbamylase; Identified by similarity to SP:Q51742; similarity to PDB:1JS1_X; match to protein family HMM PF00185; match to protein family HMM PF02729; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
       0.773
PRU_2069
Sensor histidine kinase; Identified by match to protein family HMM PF00672; overlaps another CDS with the same product name.
 
  
 0.712
PRU_1658
Cache domain protein.
 
     0.690
PRU_2348
Putative methyl-accepting chemotaxis protein; Identified by similarity to SP:P54576; match to protein family HMM PF00672; match to protein family HMM PF02743.
 
     0.683
PRU_1218
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; overlaps another CDS with the same product name.
 
     0.677
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.