STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2240Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535. (329 aa)    
Predicted Functional Partners:
radC
DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
  
    0.842
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.829
PRU_1432
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.641
rpmH
Ribosomal protein L34; Identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.
       0.639
PRU_0335
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08238.
  
 
 0.634
PRU_1758
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535; overlaps another CDS with the same product name.
 
  
 0.555
PRU_1516
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.552
PRU_2686
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.552
PRU_0442
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.524
PRU_2237
PASTA domain protein; Identified by match to protein family HMM PF03793.
 
     0.518
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.