Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2252Conserved hypothetical protein; Identified by similarity to GB:AAO78801.1; match to protein family HMM PF01883. (115 aa)    
Predicted Functional Partners:
PRU_2253
LpxH family protein; Identified by similarity to SP:Q9I2V0; match to protein family HMM PF00149.
     
 0.824
PRU_0686
Conserved hypothetical protein; Identified by similarity to GB:BAB80939.1.
  
  
 0.768
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
  
 0.762
sufD
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
   
 0.742
sufB
FeS assembly protein SufB; Identified by similarity to SP:P77522; match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
   
 0.693
sufS
Cysteine desulfurase, SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.677
PRU_2251
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01344.
       0.563
PRU_0552
MaoC domain protein; Identified by match to protein family HMM PF01575.
  
  
 0.517
PRU_2250
Hypothetical protein; Identified by glimmer; putative.
       0.466
PRU_2249
Hypothetical protein; Identified by glimmer; putative.
       0.439
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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