STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_2264Conserved hypothetical protein; Identified by similarity to GB:AAO78216.1. (260 aa)    
Predicted Functional Partners:
PRU_2265
Hypothetical protein; Identified by glimmer; putative.
       0.757
PRU_2843
Conserved hypothetical protein.
  
     0.493
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
       0.492
PRU_1503
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.479
PRU_1054
Conserved domain protein; Identified by similarity to SP:Q60377; overlaps another CDS with the same product name.
  
     0.463
PRU_1056
Conserved hypothetical protein; Identified by similarity to GB:CAG75774.1.
  
     0.446
PRU_1481
Probable toxin-antitoxin system toxin component, PIN family; Identified by similarity to GB:CAD79095.1; match to protein family HMM TIGR00305.
  
     0.437
PRU_1055
Conserved domain protein; Identified by similarity to GB:BAD01783.1; overlaps another CDS with the same product name.
  
     0.433
PRU_0556
Peptidase, C1 (papain) family; Identified by similarity to GB:AAA25250.1; match to protein family HMM PF03051; Belongs to the peptidase C1 family.
  
     0.414
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.